cisTarget
genome-wide target predictions in Drosophila melanogaster

Strategy IDTrainingCluster typeScoringConservation typeLOOCV Negativesgenome-wide
F-NLCFlyReg PWM (by Daniel Pollard)HomotypicCluster-Buster 11 genomesNetwork level conservation500 proximal promoters5kbup-limit & introns
P-NLCPhyloPWMHomotypicCluster-Buster 11 genomesNetwork level conservation500 proximal promoters5kbup-limit & introns
F-MCFlyReg PWMHomotypicCluster-Buster 11 genomesMotif conservation500 proximal promoters5kbup-limit & introns
P-MCPhyloPWMHomotypicCluster-Buster 11 genomesMotif conservation500 proximal promoters5kbup-limit & introns
F-O-MCOligo-analysis motifs + FlyReg PWMHeterotypicCluster-Buster 11 genomesNetwork level conservation500 proximal promoters5kbup-limit & introns

TF FlyBase CG FlyReg TGs FlyReg PWM phyloPWM 1kb LOOCV regions AUC Estimated sensitivity at 0.95 specificity New candidate target genes Predicted enhancers
abd-A FBgn0000014 CG10325 abd-A Antp, tsh, Dll, dpp 006081
002347
006297
003637
F-NLC: 0.59
P-NLC: 0.55
F-MC: 0.88
P-MC: 0.85
F-O-NLC: 0.88
F-NLC: 0.25
P-NLC: 0.25
F-MC: 0.25
P-MC: 0.00
F-O-NLC: 0.75
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
Adf1 FBgn0000054 CG15845 Adf1 Antp, Ddc, Adh, dpp 006446
005464
005046
003665
F-NLC: 0.92
P-NLC: 0.94
F-MC: 0.65
P-MC: 0.59
F-O-NLC: 0.95
F-NLC: 0.50
P-NLC: 0.75
F-MC: 0.25
P-MC: 0.25
F-O-NLC: 0.50
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
Antp FBgn0000095 CG1028 Antp Antp, tsh, ap 004112
002348
006193
F-NLC: 0.79
P-NLC: 0.68
F-MC: 0.84
P-MC: 0.82
F-O-NLC: 0.63
F-NLC: 0.33
P-NLC: 0.33
F-MC: 0.00
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
bcd FBgn0000166 CG1034 bcd tll, eve, ems, Kr, kni, salm, h, hb 006250
004117
003678
003685
006051
006003
005919
006413
F-NLC: 0.90
P-NLC: 0.91
F-MC: 0.91
P-MC: 0.91
F-O-NLC: 0.93
F-NLC: 0.75
P-NLC: 0.88
F-MC: 0.62
P-MC: 0.62
F-O-NLC: 0.75
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
br FBgn0000210 CG11514 br Ddc, Sgs4, Hsp23, Eig71Eg 005445
004472
001199
004527
F-NLC: 0.43
P-NLC: 0.36
F-MC: 0.20
P-MC: 0.13
F-O-NLC: 0.22
F-NLC: 0.00
P-NLC: 0.00
F-MC: 0.00
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
brk FBgn0024250 CG9653 brk zen, lab, bi 006261
005392
000446
F-NLC: 0.83
P-NLC: 0.91
F-MC: 0.94
P-MC: 0.95
F-O-NLC: 0.85
F-NLC: 0.67
P-NLC: 0.67
F-MC: 0.00
P-MC: 0.33
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
cad FBgn0000251 CG1759 cad ftz, kni, salm 004966
006056
006004
F-NLC: 0.74
P-NLC: 0.81
F-MC: 0.87
P-MC: 0.92
F-O-NLC: 0.70
F-NLC: 0.67
P-NLC: 0.67
F-MC: 0.33
P-MC: 0.33
F-O-NLC: 0.33
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
dl FBgn0000462 CG6667 dl rho, zen, twi, sna, dpp 000901
006272
006449
006285
005229
F-NLC: 1.00
P-NLC: 1.00
F-MC: 0.97
P-MC: 0.97
F-O-NLC: 1.00
F-NLC: 1.00
P-NLC: 1.00
F-MC: 0.80
P-MC: 0.60
F-O-NLC: 1.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
Dref FBgn0015664 CG5838 Dref ras, DNApol-alpha73, DNApol-alpha180, E2f 004539
002339
005998
006068
F-NLC: 0.73
P-NLC: 0.72
F-MC: 0.21
P-MC: 0.20
F-O-NLC: 0.82
F-NLC: 0.25
P-NLC: 0.00
F-MC: 0.00
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
en FBgn0000577 CG9015 en Ubx, ph-p, ftz, ci, ph-d, en, dpp 002446
006306
005108
006198
006317
006388
006408
F-NLC: 0.54
P-NLC: 0.56
F-MC: 0.68
P-MC: 0.66
F-O-NLC: 0.58
F-NLC: 0.29
P-NLC: 0.29
F-MC: 0.14
P-MC: 0.14
F-O-NLC: 0.14
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
E(spl) FBgn0000591 CG8365 E(spl) ac, sc, l(1)sc, Espl 003023
004534
003026
003016
F-NLC: 0.66
P-NLC: 0.64
F-MC: 0.79
P-MC: 0.48
F-O-NLC: 0.94
F-NLC: 0.50
P-NLC: 0.25
F-MC: 0.25
P-MC: 0.25
F-O-NLC: 0.75
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
eve FBgn0000606 CG2328 eve abd-A, Ubx, eve, gsb, tin, en, mus209 000264
006147
001787
003454
002343
006375
006351
F-NLC: 0.79
P-NLC: 0.78
F-MC: 0.79
P-MC: 0.80
F-O-NLC: 0.71
F-NLC: 0.43
P-NLC: 0.43
F-MC: 0.43
P-MC: 0.29
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
ftz FBgn0001077 CG2047 ftz Antp, Ubx, tsh, ftz, gsb, en 006091
002447
002358
004895
003455
006389
F-NLC: 0.82
P-NLC: 0.82
F-MC: 0.82
P-MC: 0.82
F-O-NLC: 0.94
F-NLC: 0.17
P-NLC: 0.17
F-MC: 0.50
P-MC: 0.50
F-O-NLC: 0.33
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
grh FBgn0004586 CG5058 grh Ubx, zen, Ddc, tll, ftz, dpp 006161
006279
005463
005153
005549
005241
F-NLC: 0.61
P-NLC: 0.60
F-MC: 0.65
P-MC: 0.66
F-O-NLC: 0.61
F-NLC: 0.17
P-NLC: 0.17
F-MC: 0.17
P-MC: 0.17
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
gt FBgn0001150 CG7952 gt abd-A, eve, Kr, kni 000267
004119
003700
006044
F-NLC: 0.73
P-NLC: 0.80
F-MC: 0.92
P-MC: 0.86
F-O-NLC: 0.96
F-NLC: 0.25
P-NLC: 0.25
F-MC: 0.50
P-MC: 0.25
F-O-NLC: 0.75
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
hb FBgn0001180 CG9786 hb abd-A, Ubx, eve, Kr, kni, salm, h, en, hb 000261
002444
002267
003683
006029
006017
005952
006382
006416
F-NLC: 0.87
P-NLC: 0.84
F-MC: 0.89
P-MC: 0.88
F-O-NLC: 0.87
F-NLC: 0.67
P-NLC: 0.67
F-MC: 0.67
P-MC: 0.56
F-O-NLC: 0.78
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
HLHm5 FBgn0002631 CG6096 HLHm5 ac, l(1)sc, Espl 003024
003027
003017
F-NLC: 0.59
P-NLC: 0.74
F-MC: 0.91
P-MC: 0.92
F-O-NLC: 0.91
F-NLC: 0.00
P-NLC: 0.00
F-MC: 0.00
P-MC: 0.00
F-O-NLC: 0.67
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
kni FBgn0001320 CG4717 kni Ubx, eve, Kr, h 005367
002266
003697
005955
F-NLC: 0.84
P-NLC: 0.80
F-MC: 0.92
P-MC: 0.91
F-O-NLC: 0.99
F-NLC: 0.50
P-NLC: 0.50
F-MC: 0.50
P-MC: 0.50
F-O-NLC: 1.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
Kr FBgn0001325 CG3340 Kr abd-A, Ubx, ko, eve, kni, salm, h, en, hb 000260
005369
006319
004114
006028
006002
005927
006381
006422
F-NLC: 0.85
P-NLC: 0.88
F-MC: 0.80
P-MC: 0.79
F-O-NLC: 0.81
F-NLC: 0.56
P-NLC: 0.44
F-MC: 0.44
P-MC: 0.44
F-O-NLC: 0.44
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
Mad FBgn0011648 CG12399 Mad zen, vg, tin 006258
006302
000747
F-NLC: 0.72
P-NLC: 0.75
F-MC: 0.85
P-MC: 0.88
F-O-NLC: 0.77
F-NLC: 0.00
P-NLC: 0.00
F-MC: 0.33
P-MC: 0.33
F-O-NLC: 0.33
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
ovo FBgn0003028 CG6824 ovo orb, otu, Sxl, ovo 006366
006363
006349
001594
F-NLC: 0.86
P-NLC: 0.86
F-MC: 0.61
P-MC: 0.69
F-O-NLC: 0.92
F-NLC: 0.50
P-NLC: 0.25
F-MC: 0.25
P-MC: 0.00
F-O-NLC: 0.25
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
pan FBgn0019664 CG17964 pan slp1, eve, Ser 000600
002461
006471
F-NLC: 0.84
P-NLC: 0.66
F-MC: 0.88
P-MC: 0.88
F-O-NLC: 0.85
F-NLC: 0.33
P-NLC: 0.00
F-MC: 0.33
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
sd FBgn0003345 CG8544 sd ct, bs, vg, kni, salm 001396
000418
006298
001390
006342
F-NLC: 0.74
P-NLC: 0.88
F-MC: 0.76
P-MC: 0.91
F-O-NLC: 0.81
F-NLC: 0.20
P-NLC: 0.40
F-MC: 0.20
P-MC: 0.60
F-O-NLC: 0.20
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
slbo FBgn0005638 CG4354 slbo Yp1, slbo, btl 005541
006136
002483
F-NLC: 0.60
P-NLC: 0.50
F-MC: 0.69
P-MC: 0.62
F-O-NLC: 0.72
F-NLC: 0.00
P-NLC: 0.00
F-MC: 0.00
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
srp FBgn0003507 CG3992 srp Fbp1, Yp1, Adh 005977
005548
005060
F-NLC: 0.42
P-NLC: 0.33
F-MC: 0.83
P-MC: 0.62
F-O-NLC: 0.32
F-NLC: 0.00
P-NLC: 0.00
F-MC: 0.67
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
tin FBgn0004110 CG7895 tin Mef2, eve, betaTub60D, tin 005979
002467
000670
000745
F-NLC: 0.99
P-NLC: 0.98
F-MC: 0.66
P-MC: 0.68
F-O-NLC: 0.99
F-NLC: 1.00
P-NLC: 0.75
F-MC: 0.50
P-MC: 0.25
F-O-NLC: 1.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
tll FBgn0003720 CG1378 tll Ubx, ems, Kr, kni, h, hb 002449
003680
003682
006030
005918
005987
F-NLC: 0.75
P-NLC: 0.74
F-MC: 0.80
P-MC: 0.79
F-O-NLC: 0.90
F-NLC: 0.50
P-NLC: 0.50
F-MC: 0.33
P-MC: 0.33
F-O-NLC: 0.33
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
Trl FBgn0013263 CG33261 Trl Ubx, tll, Hsp70Ab, alphaTub84B, Adh, Trl, Kr, Hsp26, Eip74EF, dpp 006155
005154
005504
004152
005041
006166
003002
005512
005967
003668
F-NLC: 0.88
P-NLC: 0.89
F-MC: 0.58
P-MC: 0.65
F-O-NLC: 0.88
F-NLC: 0.70
P-NLC: 0.80
F-MC: 0.40
P-MC: 0.30
F-O-NLC: 0.60
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
ttk FBgn0003870 CG11558 ttk tll, ftz, eve 005156
004909
001791
F-NLC: 0.70
P-NLC: 0.63
F-MC: 0.63
P-MC: 0.26
F-O-NLC: 0.79
F-NLC: 0.00
P-NLC: 0.00
F-MC: 0.00
P-MC: 0.00
F-O-NLC: 0.67
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
twi FBgn0003900 CG2956 twi rho, Ubx, sna, sim, tin 000906
002445
006283
004502
000300
F-NLC: 0.83
P-NLC: 0.81
F-MC: 0.62
P-MC: 0.63
F-O-NLC: 0.92
F-NLC: 0.20
P-NLC: 0.20
F-MC: 0.20
P-MC: 0.20
F-O-NLC: 0.60
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
Ubx FBgn0003944 CG10388 Ubx Antp, Ubx, tsh, betaTub60D, Dll, salm, dpp 006078
006146
002346
004395
006295
006341
003638
F-NLC: 0.66
P-NLC: 0.66
F-MC: 0.87
P-MC: 0.85
F-O-NLC: 0.73
F-NLC: 0.14
P-NLC: 0.00
F-MC: 0.57
P-MC: 0.57
F-O-NLC: 0.29
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
vvl FBgn0003995 CG10037 vvl vvl, vg, btl 000948
006301
002486
F-NLC: 0.73
P-NLC: 0.89
F-MC: 0.89
P-MC: 0.92
F-O-NLC: 0.62
F-NLC: 0.00
P-NLC: 0.00
F-MC: 0.67
P-MC: 0.67
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
zen FBgn0004053 CG1046 zen Ubx, DNApol-alpha180, Ance, en, mus209 006148
006000
004210
006374
006352
F-NLC: 0.80
P-NLC: 0.84
F-MC: 0.73
P-MC: 0.68
F-O-NLC: 0.78
F-NLC: 0.40
P-NLC: 0.40
F-MC: 0.20
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
z FBgn0004050 CG7803 z Ubx, w, Eip74EF, z, dpp 002906
006461
005968
002916
002910
F-NLC: 0.92
P-NLC: 0.93
F-MC: 0.49
P-MC: 0.46
F-O-NLC: 0.87
F-NLC: 0.40
P-NLC: 0.40
F-MC: 0.00
P-MC: 0.00
F-O-NLC: 0.00
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC
F-NLC
P-NLC
F-MC
P-MC
F-O-NLC

Other TFs, outside FlyReg:

TF FlyBase CG Footprints@FlyReg Target genes@FlyReg FlyReg PWM phyloPWM 1kb LOOCV regions AUC Estimated sensitivity at 0.95 specificity New candidate target genes Predicted enhancers
ey FBgn0005558 CG1464 ey so, shf, Optix, eya, ato shf
optix
eya
so
ato
F-NLC: 0.94 F-NLC: 0.6 F-NLC F-NLC