A new version is available - ready for beta-testing ! This version also finds enriched in vivo features and also works on ChIP peaks. Click here to use the new version.

8 job(s) in queue1 job(s) currently running

Paste list of CG numbers:
  Please do not enter a single gene here,
  but a list of related genes.
Or choose a file to upload:
Assembly & scoring
Motif collection
Z-score threshold:
ROC threshold for AUC calcuation:
Genomic threshold for visualization:
Your E-mail address:
A name for your job:



Description

Example right-aligned image

cisTargetX enables to dissect a set of co-expressed genes into direct target genes of different transcription factor motifs. The analysis is based on gene ranking and recovery curves (See Figure), and works similarly to the Lever method on vertebrate genomes.

Some of the key features of cisTargetX are:



Citation

Stein Aerts, Xiao-Jiang Quan, Annelies Claeys, Marina Naval Sanchez, Phillip Tate, Jiekun Yan, and Bassem Hassan (2010). Robust target gene discovery through transcriptome perturbations and genome-wide enhancer predictions in Drosophila uncovers a regulatory basis for sensory specification
PLoS Biology 2010 Jul 27;8(7):e1000435.

Example sets used in Aerts et al., PLoS Biology 2010