Genome-wide prioritizations for biological pathways in Drosophila melanogaster

Pathway Abbrev. Pathway Name Pathway GO-id Training set Training set GO Genomic ranking Top 100 Top 100 noTrain Top 100 noTrain GO Top 100 noTrain specific (*) Top 100 noTrain specific (*) GO Top 100 noTrain specific (*) GO specific (**)
tgfbeta transforming growth factor beta receptor signaling pathway GO:0007179 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
egfr epidermal growth factor receptor signaling pathway GO:0007173 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
fgfr fibroblast growth factor receptor signaling pathway GO:0008543 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
notch Notch signaling pathway GO:0007219 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
sevenless sevenless signaling pathway GO:0045500 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
smoothened smoothened signaling pathway GO:0007224 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
toll Toll signaling pathway GO:0008063 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
wnt Wnt receptor signaling pathway GO:0016055 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
jakstatJAK-STAT cascade GO:0007259 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec
erkERK/MAPK cascade GO:0000165 Train Train GO Full set Top100 Top100_noTrain Top100_noTrain_GO Top100_noTrain_spec Top100_noTrain_spec_GO Top100_noTrain_spec_GO_spec

(*) Note: "specific" means that these lists contain only genes that appear in the top100 of maximally 2 pathways. In other words, all genes that appear in 3 or more top100's are filtered out.
(**) Note: A similar procedure is applied for over-represented GO-terms, filtering out those GO-terms that are over-represented in 3 or more Top100-noTrain-specific gene sets.