Resources

Supplementary Material to the book chapter in Methods in Molecular Biology

• Supplementary Figure S1
• Supplementary Tables (Tables S1-S4 in 4 separate sheets in Open Office ODS format)
• Archive with gene sets for the case study
• cisTargetX results from the book chapter:
  1. Reeves_Posakony gene set [1981-CBust] [3338-CBust] [1981-SWAN]
  2. FlyBase curated expression set (FBbt:00001135) [1981-CBust] [3338-CBust] [1981-SWAN]
  3. GO gene set (GO:0016360) [1981-CBust] [3338-CBust] [1981-SWAN]
  4. STRING gene set (Network around Su(H)) [1981-CBust] [3338-CBust] [1981-SWAN]

ECCB2010 Tutorial "Current methods and applications for regulatory sequence analysis"

Link to the dedicated tutorial website

Supporting data for the Fly paper

• Stein Aerts & Bassem Hassan (2011). Whole-genome prediction of cis-regulatory modules and target genes yields insight into gene regulatory networks underlying sensory differentiation. Fly, under revision.
• cisTargetX results for 280 up-regulated genes in eye-antennal imaginal discs with Senseless over-expression.